Genetic heterogeneity of diffuse large B-cell lymphoma

Zhang, J.^#; Grubor, V.^#; Love, C. L.; Banerjee, A.; Richards, K. L.; Mieczkowski, P. A.; Dunphy, C.; Choi, W.; Au, W. Y.; Srivastava, G.; Lugar, P. L.; Rizzieri, D. A.; Lagoo, A. S.; Bernal-Mizrachi, L.; Mann, K. P.; Flowers, C.; Naresh, K.; Evens, A.; Gordon, L. I.; Czader, M.; Gill, J. I.; Hsi, E. D.; Liu, Q.; Fan, A.; Walsh, K.; Jima, D.; Smith, L. L.; Johnson, A. J.; Byrd, J. C.; Luftig, M. A.; Ni, T.; Zhu, J.; Chadburn, A.; Levy, S.; Dunson, D.

Proc Natl Acad Sci U S A, 2013, 110(4): 1398-1403.

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A paired-end sequencing strategy to map the complex landscape of transcription initiation

Ni, Ting^#; Corcoran, David L.^#; Rach, Elizabeth A.; Song, Shen; Spana, Eric P.; Gao, Yuan; Ohler, Uwe^*; Zhu, Jun^*

Nature Methods, 2010, 7(7): 521-527.

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PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum

Jiang, Lubin^#*; Mu, Jianbing^#; Zhang, Qingfeng; Ni, Ting; Srinivasan, Prakash; Rayavara, Kempaiah; Yang, Wenjing; Turner, Louise; Lavstsen, Thomas; Theander, Thor G.; Peng, Weiqun; Wei, Guiying; Jing, Qingqing; Wakabayashi, Yoshiyuki; Bansal, Abhisheka; Luo, Yan; Ribeiro, Jose M. C.; Scherf, Artur; Aravind, L.; Zhu, Jun; Zhao, Keji; Miller, Louis H.^*

Nature, 2013, 499(7457): 223-227.

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Transcription Initiation Patterns Indicate Divergent Strategies for Gene Regulation at the Chromatin Level

Rach, Elizabeth A.^#; Winter, Deborah R.^#; Benjamin, Ashlee M.; Corcoran, David L.; Ni, Ting; Zhu, Jun; Ohler, Uwe^*

PLoS Genetics, 2011, 7(1): e1001274.

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The Prevalence and Regulation of Antisense Transcripts in Schizosaccharomyces pombe

Ni, Ting^#; Tu, Kang^#; Wang, Zhong; Song, Shen; Wu, Han; Xie, Bin; Scott, Kristin C.; Grewal, Shiv I.; Gao, Yuan; Zhu, Jun^*

PLos One, 2010, 5(12): e15271.

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Histone H2B ubiquitin ligase RNF20 is required for MLL-rearranged leukemia

Wang, E.^#; Kawaoka, S.^#; Yu, M.; Shi, J.; Ni, T.; Yang, W.; Zhu, J.; Roeder, R. G.^*; Vakoc, C. R.^*

Proc Natl Acad Sci U S A(Epub ahead of print), 2013, 110(10): 3901-3906.

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Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network.

Busser, Brian W^#; Huang, Di^#; Rogacki, Kevin R^#; Lane, Elizabeth A; Shokri, Leila; Ni, Ting; Gamble, Caitlin E; Gisselbrecht, Stephen S; Zhu, Jun; Bulyk, Martha L; Ovcharenko, Ivan; Michelson, Alan M^*

Proceedings of the National Academy of Sciences of the United States of America, 2012, 109(50): 20768-20773.

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RNA polymerase II-associated factor 1 regulates the release and phosphorylation of paused RNA polymerase II.

Yu, Ming^#; Yang, Wenjing^#; Ni, Ting; Tang, Zhanyun; Nakadai, Tomoyoshi; Zhu, Jun; Roeder, Robert G^*

Science, 2015, 350(6266): 1383-1386.

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Follicular CXCR5-expressing CD8(+) T cells curtail chronic viral infection

He, Ran^#; Hou, Shiyue^#; Liu, Cheng^#; Zhang, Anli; Bai, Qiang; Han, Miao; Yang, Yu; Wei, Gang; Shen, Ting; Yang, Xinxin; Xu, Lifan; Chen, Xiangyu; Hao, Yaxing; Wang, Pengcheng; Zhu, Chuhong; Ou, Juanjuan; Liang, Houjie; Ni, Ting; Zhang, Xiaoyan; Zhou, Xinyuan; Deng, Kai; Chen, Yaokai; Luo, Yadong; Xu, Jianqing; Qi, Hai^*; Wu, Yuzhang^*; Ye, Lilin^*

Nature, 2016, 537(7620): 412.

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A viral genome landscape of RNA polyadenylation from KSHV latent to lytic infection.

Majerciak, Vladimir^#; Ni, Ting^#; Yang, Wenjing; Meng, Bowen; Zhu, Jun^*; Zheng, Zhi-Ming^*

PLoS Pathogens, 2013, 9(11).

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