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Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome
- Jia, Kai-Hua; Liu, Hui; Zhang, Ren-Gang; Xu, Jie; Zhou, Shan-Shan; Jiao, Si-Qian; Yan, Xue-Mei; Tian, Xue-Chan; Shi, Tian-Le; Luo, Hang; Li, Zhi-Chao; Bao, Yu-Tao; Nie, Shuai; Guo, Jing-Fang; Porth, Ilga; El-Kassaby, Yousry A.; Wang, Xiao-Ru; Chen, Charles; Van de Peer, Yves; Zhao, Wei*; Mao, Jian-Feng*
- Horticulture Research, 2021, 8(1): 177.
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Landscape genomics predicts climate change-related genetic offset for the widespread Platycladus orientalis (Cupressaceae)
- Jia, Kai-Hua; Zhao, Wei; Maier, Paul Andrew; Hu, Xian-Ge; Jin, Yuqing; Zhou, Shan-Shan; Jiao, Si-Qian; El-Kassaby, Yousry A.; Wang, Tongli; Wang, Xiao-Ru; Mao, Jian-Feng*
- Evolutionary Applications, 2020, 13(4): 665-676.
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Chromosome-scale assembly of the genome of Salix dunnii reveals a male-heterogametic sex determination system on chromosome 7
- He, Li*; Jia, Kai-Hua; Zhang, Ren-Gang; Wang, Yuan; Shi, Tian-Le; Li, Zhi-Chao; Zeng, Si-Wen; Cai, Xin-Jie; Wagner, Natascha Dorothea; Horandl, Elvira; Muyle, Aline; Yang, Ke; Charlesworth, Deborah; Mao, Jian-Feng*
- Molecular Ecology Resources, 2021, 21(6): 1966-1982.
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UV-B-induced molecular mechanisms of stress physiology responses in the major northern Chinese conifer Pinus tabuliformis Carr.
- Jie, Xu; Shuai, Nie; Chao-Qun, Xu; Hui, Liu; Kai-Hua, Jia; Shan-Shan, Zhou; Wei, Zhao; Xian-Qing, Zhou; Yousry A, El-Kassaby; Xiao-Ru, Wang; Ilga, Porth; Jian-Feng, Mao
- Tree Physiology, 2021.
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A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes
- Zhou, Shan-Shan; Yan, Xue-Mei; Zhang, Kai-Fu; Liu, Hui; Xu, Jie; Nie, Shuai; Jia, Kai-Hua; Jiao, Si-Qian; Zhao, Wei; Zhao, You-Jie; Porth, Ilga; El Kassaby, Yousry A.; Wang, Tongli; Mao, Jian-Feng*
- Scientific Data, 2021, 8(1): 174.
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Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger
- Cheng, Shi-Ping; Jia, Kai-Hua; Liu, Hui; Zhang, Ren-Gang; Li, Zhi-Chao; Zhou, Shan-Shan; Shi, Tian-Le; Ma, Ai-Chu; Yu, Cong-Wen; Gao, Chan; Cao, Guang-Lei; Zhao, Wei; Nie, Shuai; Guo, Jing-Fang; Jiao, Si-Qian; Tian, Xue-Chan; Yan, Xue-Mei; Bao, Yu-Tao; Yun, Quan-Zheng; Wang, Xin-Zhu; Porth, Ilga; El-Kassaby, Yousry A.; Wang, Xiao-Ru; Li, Zhen; Van de Peer, Yves*; Mao, Jian-Feng*
- Horticulture Research, 2021, 8(1): 188.
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The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements
- Liu, Ping-Li; Zhang, Xi; Mao, Jian-Feng; Hong, Yan-Ming; Zhang, Ren-Gang; Yilan, E.; Nie, Shuai; Jia, Kaihua; Jiang, Chen-Kun; He, Jian; Shen, Weiwei; He, Qizouhong; Zheng, Wenqing; Abbas, Samar; Jewaria, Pawan Kumar; Tian, Xuechan; Liu, Chang-jun; Jiang, Xiaomei; Yin, Yafang; Liu, Bo; Wang, Li; Jin, Biao; Ma, Yongpeng; Qiu, Zongbo; Baluska, Frantisek; Samaj, Jozef; He, Xinqiang; Niu, Shihui; Xie, Jianbo; Xie, Lei; Xu, Huimin; Kong, Hongzhi; Ge, Song; Dixon, Richard A.
- Genome Biology, 2020, 21(1): 291.
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Chromosome-level genome assembly of a parent species of widely cultivated azaleas
- Yang, Fu-Sheng; Nie, Shuai; Liu, Hui; Shi, Tian-Le; Tian, Xue-Chan; Zhou, Shan-Shan; Bao, Yu-Tao; Jia, Kai-Hua; Guo, Jing-Fang; Zhao, Wei; An, Na; Zhang, Ren-Gang; Yun, Quan-Zheng; Wang, Xin-Zhu; Mannapperuma, Chanaka; Porth, Ilga; El-Kassaby, Yousry Aly; Street, Nathaniel Robert; Wang, Xiao-Ru; Van de Peer, Yves*; Mao, Jian-Feng*
- Nature Communications, 2020, 11(1): 5269.
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Genome sequence of Malania oleifera, a tree with great value for nervonic acid production
- Xu, Chao-Qun; Liu, Hui; Zhou, Shan-Shan; Zhang, Dong-Xu; Zhao, Wei; Wang, Sihai; Chen, Fu; Sun, Yan-Qiang; Nie, Shuai; Jia, Kai-Hua; Jiao, Si-Qian; Zhang, Ren-Gang; Yun, Quan-Zheng; Guan, Wenbin; Wang, Xuewen; Gao, Qiong; Bennetzen, Jeffrey L.; Maghuly, Fatemeh; Porth, Ilga; Van de Peer, Yves; Wang, Xiao-Ru; Ma, Yongpeng*; Mao, Jian-Feng*
- GigaScience, 2019, 8(2): giy164.
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In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species' adaptability to environmental cues
- Zhou, Shan-Shan; Xing, Zhen; Liu, Hui; Hu, Xian-Ge; Gao, Qiong; Xu, Jie; Jiao, Si-Qian; Jia, Kai-Hua; Jin, Yu Qing; Zhao, Wei; Porth, Ilga; El-Kassaby, Yousry A.; Mao, Jian-Feng*
- BMC Genomics, 2019, 20(1): 213.
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